Virus Evolution

Where do all the subtypes go? Temporal dynamics of H8-H12 influenza A viruses in waterfowl

Divergence dating using mixed effects clock modelling: An application to HIV-1

Novel insights into endogenous RNA viral elements in Ixodes scapularis and other arbovirus vector genomes

Selective constraint and adaptive potential of West Nile virus within and among naturally infected avian hosts and mosquito vectors

SANTA-SIM: simulating viral sequence evolution dynamics under selection and recombination

Genetic diversity and cross-species transmission of kobuviruses in Vietnam

Incorporating sampling uncertainty in the geospatial assignment of taxa for virus phylogeography

Mosquito bottlenecks alter viral mutant swarm in a tissue and time-dependent manner with contraction and expansion of variant positions and diversity

Inferring time-dependent migration and coalescence patterns from genetic sequence and predictor data in structured populations

Comparing patterns and scales of plant virus phylogeography: Rice yellow mottle virus in Madagascar and in continental Africa